About ci-1

This dataset contains calcium imaging data from various genetically defined neuronal populations in the brain of Ciona intestinalis. It also contains data from non-neuronal cells, the epidermis (CesA cells) and Trunk Lateral cells (HNK-1 cells)

The data, analysis procedures, and interactive figures are all functionally linked and encapsulated in a project that can be easily explored with our free open source software platform (http://www.mesmerizelab.org/). The raw data & analysis procedures are fully transparent and traceable at the level of individual datapoints (see the "Interactive Heatmaps" example at the bottom of this page: http://www.mesmerizelab.org/Overview.html).

The dataset is structured as a Mesmerize project. The easiest way to get Mesmerize is to install the snap package. Instructions are here: http://www.mesmerizelab.org/user_guides/installation.html

Please see the README file that comes along with the dataset for details on opening the dataset, the structure, descriptions of the analysis flowcharts and interactive plots.

The dataset is available at the following location:

https://doi.org/10.6084/m9.figshare.10289162

How to cite:

This dataset is associated with the following manuscript:

Mesmerize: A highly versatile platform for calcium imaging analysis and creation of self-contained FAIR datasets. Kushal Kolar, Daniel Dondorp, Marios Chatzigeorgiou. bioRxiv 840488; doi: https://doi.org/10.1101/840488