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About hc-13

Information about the hc-13 data set.

Summary.

The CRCNS.org hc-13 data set contains recordings from hippocampus regions CA1 and dorsal medial prefrontal cortex (PFC) from rats performing a foraging task. The data was used to determine relationships between activity in hippocampus and PFC neurons and learning and decision making. The main behavior performed by the animal during the experiments was an alternate choice task in a foraging context. The data was used to produce results described in the following paper:

Jai Y. Yu, Kenneth Kay, Daniel Liu, Irene Grossrubatscher, Adrianna Loback, Marielena Sosa, Jason E. Chung, Mattias P. Karlsson, Margaret C. Larkin and Loren M. Frank. Distinct hippocampal-cortical memory representations for experiences associated with movement versus immobility. eLife 6, doi:10.7554/eLife.27621 (2017).

Format of the data

The data are stored in Matlab files, with different files used for the different types of data. Details are given in the data description document listed at the bottom of this page.  Total data size is about 8 GB compressed.

Conditions for using the data 

These data required years of effort to collect, and it is the lab policy that anything published using these data list the person who collected the data and Dr. Frank as authors. Please contact Dr. Frank if you would like to discuss this (loren@phy.ucsf.edu). The data was collected by Dr. Jai Yu with assistance from Daniel Liu and Irene Grossrubatscher. Also, any publications made using the data should cite the data set using the following:

Jai Y. Yu, Daniel Liu, Irene Grossrubatscher and Loren M. Frank (2017). Simultaneous extracellular recordings from hippocampal area CA1 and dorsal medial prefrontal cortex from rats performing a foraging task. CRCNS.org.
http://dx.doi.org/10.6080/K0H41PK8

The above citation uses a Digital Object Identifier (DOI) which is assigned to the data set.  The DOI was created using DataCite (www.datacite.org) and the California Digital Library, "EZID" system (n2t.net/ezid/).

How to download the data

The data may be downloaded from:
https://portal.nersc.gov/project/crcns/download/hc-13
A CRCNS.org account is required.  See the download link for more information about downloading.

Getting help using the data.

If you have questions about using the data, post them on the forum for using data sets.

Documentation files

crcns_hc-13_data_description.pdf

Document Actions